R框架、包和软件集合:Awesome R
jopen
10年前
R框架、包和软件集合:Awesome R。
- Awesome R </li>
- Resources
- Websites
- Books
- Reference Card </ul> </li>
- Other Awesome Lists
- Contributing </ul>
- RStudio - A powerful and productive user interface for R. Works great on Windows, Mac, and Linux.
- JGR - JGR (speak 'Jaguar') is a Java Gui for R.
- Emacs + ESS - Emacs Speaks Statistics is an add-on package for emacs text editors.
- StatET - An Eclipse based IDE (integrated development environment) for R.
- Revolution R Enterprise - Revolution R would be offered free to academic users and commercial software would focus on big data, large scale multiprocessor functionality.
- R Commander - A package that provides a basic graphical user interface.
- IPython - An interactive Python interpreter,and it supports execution of R code while capturing both output and figures.
- Deducer - A Menu driven data analysis GUI with a spreadsheet like data editor.
- dplyr - Blazing fast data frames manipulation and database query.
- data.table - Fast data manipulation in a short and flexible syntax.
- reshape2 - Flexible rearrange, reshape and aggregate data.
- tidyr - Easily tidy data with spread and gather functions.
- ggplot2 - An implementation of the Grammar of Graphics.
- ggvis - Interactive grammar of graphics for R.
- rCharts - Interactive JS Charts from R.
- lattice - A powerful and elegant high-level data visualization system.
- rgl - 3D visualization device system for R.
- Cairo - R graphics device using cairo graphics library for creating high-quality display output.
- extrafont - Tools for using fonts in R graphics.
- showtext - Enable R graphics device to show text using system fonts.
- knitr - Easy dynamic report generation in R.
- xtable - Export tables to LaTeX or HTML.
- rapport - An R templating system.
- rmarkdown - Dynamic documents for R.
- shiny - Easy interactive web applications with R.
- RCurl - General network (HTTP/FTP/...) client interface for R.
- httpuv - HTTP and WebSocket server library.
- XML - Tools for parsing and generating XML within R.
- parallel - R started with release 2.14.0 which includes a new package parallel incorporating (slightly revised) copies of packages multicore and snow.
- Rmpi - Rmpi provides an interface (wrapper) to MPI APIs. It also provides interactive R slave environment.
- foreach - Executing the loop in parallel
- Rcpp - Rcpp provides a powerful API on top of R, make function in R extremely faster.
- Rcpp11 - Rcpp11 is a complete redesign of Rcpp, targetting C++11.
- compiler - speeding up your R code using the JIT
- rJava - Low-level R to Java interface.
- jvmr - Integration of R, Java, and Scala.
- rJython - R interface to Python via Jython.
- rPython - Package allowing R to call Python.
- runr - Run Julia and Bash from R.
- RJulia - R package Call Julia.
- RinRuby - a Ruby library that integrates the R interpreter in Ruby.
- R.matlab - Read and write of MAT files together with R-to-MATLAB connectivity.
- RcppOctave - Seamless Interface to Octave and Matlab.
- RSPerl - A bidirectional interface for calling R from Perl and Perl from R.
- RODBC - ODBC database access for R.
- DBI - Defines a common interface between the R and database management systems.
- RMySQL - R interface to the MySQL database.
- ROracle - OCI based Oracle database interface for R.
- RPostgreSQL - R interface to the PostgreSQL database system.
- RSQLite - SQLite interface for R
- RJDBC - Provides access to databases through the JDBC interface.
- rmongodb - R driver for MongoDB.
- rredis - Redis client for R.
- RCassandra - Direct interface (not Java) to the most basic functionality of Apache Cassanda.
- RHive - R extension facilitating distributed computing via Apache Hive.
- h2o - Deeplearning, Random forests, GBM, KMeans, PCA, GLM
- Clever Algorithms For Machine Learning
- Machine Learning For Hackers
- rpart - Recursive Partitioning and Regression Trees
- randomForest - Breiman and Cutler's random forests for classification and regression
- lasso2 - L1 constrained estimation aka ‘lasso’
- gbm - Generalized Boosted Regression Models
- e1071 - Misc Functions of the Department of Statistics (e1071), TU Wien
- tgp - Bayesian treed Gaussian process models
- rgp - R genetic programming framework
- arules - Mining Association Rules and Frequent Itemsets
- frbs - Fuzzy Rule-based Systems for Classification and Regression Tasks
- rattle - Graphical user interface for data mining in R
- ahaz - Regularization for semiparametric additive hazards regression
- arules - Mining Association Rules and Frequent Itemsets
- bigrf - Big Random Forests: Classification and Regression Forests for Large Data Sets
- bigRR - Generalized Ridge Regression (with special advantage for p >> n cases)
- bmrm - Bundle Methods for Regularized Risk Minimization Package
- Boruta - A wrapper algorithm for all-relevant feature selection
- bst - Gradient Boosting
- C50 - C5.0 Decision Trees and Rule-Based Models
- caret - Classification and Regression Training
- CORElearn - Classification, regression, feature evaluation and ordinal evaluation
- CoxBoost - Cox models by likelihood based boosting for a single survival endpoint or competing risks
- Cubist - Rule- and Instance-Based Regression Modeling
- earth - Multivariate Adaptive Regression Spline Models
- elasticnet - Elastic-Net for Sparse Estimation and Sparse PCA
- ElemStatLearn - Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
- evtree - Evolutionary Learning of Globally Optimal Trees
- frbs - Fuzzy Rule-based Systems for Classification and Regression Tasks
- GAMBoost - Generalized linear and additive models by likelihood based boosting
- gamboostLSS - Boosting Methods for GAMLSS
- gbm - Generalized Boosted Regression Models
- glmnet - Lasso and elastic-net regularized generalized linear models
- glmpath - L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
- GMMBoost - Likelihood-based Boosting for Generalized mixed models
- grplasso - Fitting user specified models with Group Lasso penalty
- grpreg - Regularization paths for regression models with grouped covariates
- hda - Heteroscedastic Discriminant Analysis
- ipred - Improved Predictors
- kernlab - kernlab: Kernel-based Machine Learning Lab
- klaR - Classification and visualization
- lars - Least Angle Regression, Lasso and Forward Stagewise
- lasso2 - L1 constrained estimation aka ‘lasso’
- LiblineaR - Linear Predictive Models Based On The Liblinear C/C++ Library
- LogicReg - Logic Regression
- maptree - Mapping, pruning, and graphing tree models
- mboost - Model-Based Boosting
- mvpart - Multivariate partitioning
- ncvreg - Regularization paths for SCAD- and MCP-penalized regression models
- nnet - eed-forward Neural Networks and Multinomial Log-Linear Models
- oblique.tree - Oblique Trees for Classification Data
- pamr - Pam: prediction analysis for microarrays
- party - A Laboratory for Recursive Partytioning
- partykit - A Toolkit for Recursive Partytioning
- penalized - L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
- penalizedLDA - Penalized classification using Fisher's linear discriminant
- penalizedSVM - Feature Selection SVM using penalty functions
- quantregForest - quantregForest: Quantile Regression Forests
- randomForest - randomForest: Breiman and Cutler's random forests for classification and regression
- randomForestSRC - randomForestSRC: Random Forests for Survival, Regression and Classification (RF-SRC)
- rda - Shrunken Centroids Regularized Discriminant Analysis
- rdetools - Relevant Dimension Estimation (RDE) in Feature Spaces
- REEMtree - Regression Trees with Random Effects for Longitudinal (Panel) Data
- relaxo - Relaxed Lasso
- rgenoud - R version of GENetic Optimization Using Derivatives
- rgp - R genetic programming framework
- Rmalschains - Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
- rminer - Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
- ROCR - Visualizing the performance of scoring classifiers
- RoughSets - Data Analysis Using Rough Set and Fuzzy Rough Set Theories
- rpart - Recursive Partitioning and Regression Trees
- RPMM - Recursively Partitioned Mixture Model
- RSNNS - Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
- RWeka - R/Weka interface
- RXshrink - RXshrink: Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
- sda - Shrinkage Discriminant Analysis and CAT Score Variable Selection
- SDDA - Stepwise Diagonal Discriminant Analysis
- svmpath - svmpath: the SVM Path algorithm
- tgp - Bayesian treed Gaussian process models
- tree - Classification and regression trees
- varSelRF - Variable selection using random forests
- caret - Unified interface to ~150 ML algorithms in R.
- SuperLearner and subsemble - Multi-algorithm ensemble learning packages.
- Introduction to Statistical Learning
- tm - A comprehensive text mining framework for R.
- openNLP - Apache OpenNLP Tools Interface.
- koRpus - An R Package for Text Analysis.
- zipfR - Statistical models for word frequency distributions.
- tmcn - A Text mining toolkit for international characters especially for Chinese.
- rmmseg4j - R interface to the Java Chinese word segmentation system of mmseg4j.
- Rwordseg - Chinese word segmentation.
- coda - Output analysis and diagnostics for MCMC.
- mcmc - Markov Chain Monte Carlo.
- MCMCpack - Markov chain Monte Carlo (MCMC) Package.
- R2WinBUGS - Running WinBUGS and OpenBUGS from R / S-PLUS.
- BRugs - R interface to the OpenBUGS MCMC software.
- quantmod - Quantitative Financial Modelling & Trading Framework for R.
- TTR - Functions and data to construct technical trading rules with R.
- PerformanceAnalytics - Econometric tools for performance and risk analysis.
- zoo - S3 Infrastructure for Regular and Irregular Time Series.
- xts - eXtensible Time Series.
- tseries - Time series analysis and computational finance.
- fAssets - Analysing and Modelling Financial Assets.
- Bioconductor - Tools for the analysis and comprehension of high-throughput genomic data.
- genetics - Classes and methods for handling genetic data.
- gap - An integrated package for genetic data analysis of both population and family data.
- ape - Analyses of Phylogenetics and Evolution.
- devtools - Tools to make an R developer's life easier.
- testthat - An R package to make testing fun.
- R6 - simpler, faster, lighter-weight alternative to R's built-in classes.
- pryr - Make it easier to understand what's going on in R.
- roxygen - Describe your functions in comments next to their definitions.
- lineprof - Visualise line profiling results in R.
- packrat - Make your R projects more isolated, portable, and reproducible.
- installr - Functions for installing softwares from within R.
- renjin - a JVM-based interpreter for R.
- pqR - a "pretty quick" implementation of R
- fastR - FastR is an implementation of the R Language in Java atop Truffle and Graal.
- riposte - a fast interpreter and JIT for R.
- TERR - TIBCO Enterprise Runtime for R.
- RRE - Revolution R Enterprise.
- CXXR - Refactorising R into C++.
- R-project - The R Project for Statistical Computing.
- R Bloggers - There are people scattered across the Web who blog about R. This is simply an aggregator of many of those feeds.
- DataCamp - Learn R data analytics online.
- Quick-R - An excellent quick reference.
- Advanced R - An in-progress book site for Advanced R.
- CRAN Task Views - Task Views for CRAN packages.
- The Art of R Programming - It's a good resource for systematically learning fundamentals such as types of objects, control statements, variable scope, classes and debugging in R.
- R in Action - This book aims at all levels of users, with sections for beginning, intermediate and advanced R ranging from "Exploring R data structures" to running regressions and conducting factor analyses.
- Use R! - This series of inexpensive and focused books from Springer publish shorter books aimed at practitioners. Books can discuss the use of R in a particular subject area, such as bayesian networks, ggplot2 and Rcpp.
- R Reference Card 2.0 - Material from R for Beginners by permission of Emmanuel Paradis (Version 2 by Matt Baggott).
- Data Mining Refcard - R Reference Card for Data Mining.
- Regression Analysis Refcard - R Reference Card for Regression Analysis.
- Reference Card for ESS - Reference Card for ESS.
- R Markdown Cheat sheet - Quick reference guide for writing reports with R Markdown.
- Shiny Cheat sheet - Quick reference guide for building Shiny apps.
Integrated Development Environment
Integrated Development Environment
Data Manipulation
Packages for cooking data.
Graphic Displays
Packages for showing data.
Reproducible Research
Packages for literate programming.
Web Technologies and Services
Packages to surf the web.
Parallel Computing
Packages for parallel computing.
High Performance
Packages for making R faster.
Language API
Packages for other languages.
Database Management
Packages for managing data.
Machine Learning
Packages for making R cleverer.
Natural Language Processing
Packages for Natural Language Processing.
Bayesian
Packages for Bayesian Inference.
Finance
Packages for dealing with money.
Genetics
Packages for Statistical Genetics.
R Development
Packages for packages.
Other Interpreter
Alternative R engines.
Resources
Where to discover new R-esources.
Websites
Books
Reference Card
Other Awesome Lists